{{category 定番ソフトウェア}}
*OLCアセンブラ
**[WGS assembler|http://wgs-assembler.sourceforge.net/]
**[Newbler|http://genepool.bio.ed.ac.uk/Gene_Pool/454_software/]
**[MaSuRCA|http://www.genome.umd.edu/masurca.html]
**[MIRA|http://www.chevreux.org/projects_mira.html]
**[CAP3|http://seq.cs.iastate.edu/cap3.html]
**[Phrap|http://www.phrap.org/]
**[Arachne|http://www.broadinstitute.org/science/programs/genome-biology/crd]
*DBGアセンブラ
**[ABySS|http://www.bcgsc.ca/platform/bioinfo/software/abyss]
**[ALLPATHS-LG|http://www.broadinstitute.org/science/programs/genome-biology/crd]
**[SOAPdenovo|http://soap.genomics.org.cn/soapdenovo.html]
**[Velvet|http://www.ebi.ac.uk/~zerbino/velvet/]