MrBayes5D is "fifthdimension edition" of MrBayes.
GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Lesser General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. 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If you have any errors, questions and/or comments, please let me know. Do not request a response to the authors of original MrBayes.
Seventh testing release. Wrong parameter values of VT model was fixed. The FLU model was added.
Sixth testing release. The bug of application of mtZoa model was fixed. AVX supported binary was added for Windows (but not tested).
Fifth testing release. Default value of dirichlet parameter of rate multiplier was changed from 10000 to 1000. Support for mtZoa model was added. StopSamples option was added to MCMC and MCMCP commands. If StopSamples and StopVal options are given, and StopRule option is enabled, MCMC will stop when ASDSF fall into below StopVal AND the number of samples after convergence rise above StopSamples. Note that the number of samples rise Ntrees-fold if brlens or topology is unlinked.
Fourth testing release. Default value of dirichlet parameter of rate multiplier was changed from 500 to 10000.
Third testing release. All binaries were recompiled. SwapAdjacent and NSwaps options were enabled. SwapDescendAll option was added.
Second testing release. Universal binary for MacOS X was recompiled.
First testing release.